Applications & Software
Installed Software and Applications
All software is installed centrally by the IT department in the cluster via Modules. If you need to request that a piece of software is installed, please reach out and request the software by sending an email to the IT Helpdesk at helpdesk@wistar.org.
Containers
Software has grown in complexity over the years making it difficult at times to install and run the software. Containers address this problem by storing the software and all of its dependencies (including a minimal operating system) in a single, large image so that there is nothing to install and when it comes time to run the software everything "just works". This makes the software both shareable and portable while the output becomes reproducible.
Containers can be utilized in the HPC Cluster with Apptainer (similar to docker). Please see the Apptainer page for more information.
Installing your own Software
You cannot install software in the Applications directory. If you need to request that a piece of software is installed, please reach out and request the software by sending a email to the IT Helpdesk at helpdesk@wistar.org.
NOTE: Do NOT install software in your Home Directory - there is a 10GB limit on home directories on purpose so that data and applications are not store there.
If your lab has need for their own software installation location, please reach out to the IT department, and we will configure a location to install applications. Please do not use your lab share to install applications - these are being backed up nightly and installed software does not need to be backed up.
Installed Modules
To find the most updated list of installed modules - you can run the following commands on the cluster:
Short List
module avail # Shows ALL
module avail xyz # Shows modules that contain xyz
List with Module Description
module spider # Shows ALL with brief description
module spider xyz # Shows modules that contain xyz - more detailed info
Load Module
module load xyz
Python Modules
Package | Version |
---|---|
aiohttp | 3.8.1 |
aiosignal | 1.2.0 |
alabaster | 0.7.12 |
anaconda-client | 1.9.0 |
anaconda-navigator | 2.1.4 |
anaconda-project | 0.10.2 |
anyio | 3.5.0 |
appdirs | 1.4.4 |
argon2-cffi | 21.3.0 |
argon2-cffi-bindings | 21.2.0 |
arrow | 1.2.2 |
astroid | 2.6.6 |
astropy | 5.0.4 |
asttokens | 2.0.5 |
async-timeout | 4.0.1 |
atomicwrites | 1.4.0 |
attrs | 21.4.0 |
Automat | 20.2.0 |
autopep8 | 1.6.0 |
Babel | 2.9.1 |
backcall | 0.2.0 |
backports.functools-lru-cache | 1.6.4 |
backports.tempfile | 1 |
backports.weakref | 1.0.post1 |
bcrypt | 3.2.0 |
beautifulsoup4 | 4.11.1 |
binaryornot | 0.4.4 |
bitarray | 2.4.1 |
bkcharts | 0.2 |
black | 19.10b0 |
bleach | 4.1.0 |
bokeh | 2.4.2 |
boto3 | 1.21.32 |
botocore | 1.24.32 |
Bottleneck | 1.3.4 |
brotlipy | 0.7.0 |
cachetools | 4.2.2 |
certifi | 2021.10.8 |
cffi | 1.15.0 |
chardet | 4.0.0 |
charset-normalizer | 2.0.4 |
click | 8.0.4 |
cloudpickle | 2.0.0 |
clyent | 1.2.2 |
colorama | 0.4.4 |
colorcet | 2.0.6 |
conda | 4.12.0 |
conda-build | 3.21.8 |
conda-content-trust | 0+unknown |
conda-pack | 0.6.0 |
conda-package-handling | 1.8.1 |
conda-repo-cli | 1.0.4 |
conda-token | 0.3.0 |
conda-verify | 3.4.2 |
constantly | 15.1.0 |
cookiecutter | 1.7.3 |
cryptography | 3.4.8 |
cssselect | 1.1.0 |
cycler | 0.11.0 |
Cython | 0.29.28 |
cytoolz | 0.11.0 |
daal4py | 2021.5.0 |
dask | 2022.2.1 |
datashader | 0.13.0 |
datashape | 0.5.4 |
debugpy | 1.5.1 |
decorator | 5.1.1 |
defusedxml | 0.7.1 |
diff-match-patch | 20200713 |
distributed | 2022.2.1 |
docutils | 0.17.1 |
entrypoints | 0.4 |
et-xmlfile | 1.1.0 |
executing | 0.8.3 |
fastjsonschema | 2.15.1 |
filelock | 3.6.0 |
flake8 | 3.9.2 |
Flask | 1.1.2 |
fonttools | 4.25.0 |
frozenlist | 1.2.0 |
fsspec | 2022.2.0 |
future | 0.18.2 |
gensim | 4.1.2 |
glob2 | 0.7 |
gmpy2 | 2.1.2 |
google-api-core | 1.25.1 |
google-auth | 1.33.0 |
google-cloud-core | 1.7.1 |
google-cloud-storage | 1.31.0 |
google-crc32c | 1.1.2 |
google-resumable-media | 1.3.1 |
googleapis-common-protos | 1.53.0 |
greenlet | 1.1.1 |
grpcio | 1.42.0 |
h5py | 3.6.0 |
HeapDict | 1.0.1 |
holoviews | 1.14.8 |
hvplot | 0.7.3 |
hyperlink | 21.0.0 |
idna | 3.3 |
imagecodecs | 2021.8.26 |
imageio | 2.9.0 |
imagesize | 1.3.0 |
importlib-metadata | 4.11.3 |
incremental | 21.3.0 |
inflection | 0.5.1 |
iniconfig | 1.1.1 |
intake | 0.6.5 |
intervaltree | 3.1.0 |
ipykernel | 6.9.1 |
ipython | 8.2.0 |
ipython-genutils | 0.2.0 |
ipywidgets | 7.6.5 |
isort | 5.9.3 |
itemadapter | 0.3.0 |
itemloaders | 1.0.4 |
itsdangerous | 2.0.1 |
jdcal | 1.4.1 |
jedi | 0.18.1 |
jeepney | 0.7.1 |
Jinja2 | 2.11.3 |
jinja2-time | 0.2.0 |
jmespath | 0.10.0 |
joblib | 1.1.0 |
json5 | 0.9.6 |
jsonschema | 4.4.0 |
jupyter | 1.0.0 |
jupyter-client | 6.1.12 |
jupyter-console | 6.4.0 |
jupyter-core | 4.9.2 |
jupyter-server | 1.13.5 |
jupyterlab | 3.3.2 |
jupyterlab-pygments | 0.1.2 |
jupyterlab-server | 2.10.3 |
jupyterlab-widgets | 1.0.0 |
keyring | 23.4.0 |
kiwisolver | 1.3.2 |
lazy-object-proxy | 1.6.0 |
libarchive-c | 2.9 |
llvmlite | 0.38.0 |
locket | 0.2.1 |
lxml | 4.8.0 |
Markdown | 3.3.4 |
MarkupSafe | 2.0.1 |
matplotlib | 3.5.1 |
matplotlib-inline | 0.1.2 |
mccabe | 0.6.1 |
mistune | 0.8.4 |
mkl-fft | 1.3.1 |
mkl-random | 1.2.2 |
mkl-service | 2.4.0 |
mock | 4.0.3 |
mpmath | 1.2.1 |
msgpack | 1.0.2 |
multidict | 5.2.0 |
multipledispatch | 0.6.0 |
munkres | 1.1.4 |
mypy-extensions | 0.4.3 |
navigator-updater | 0.2.1 |
nbclassic | 0.3.5 |
nbclient | 0.5.13 |
nbconvert | 6.4.4 |
nbformat | 5.3.0 |
nest-asyncio | 1.5.5 |
networkx | 2.7.1 |
nltk | 3.7 |
nose | 1.3.7 |
notebook | 6.4.8 |
numba | 0.55.1 |
numexpr | 2.8.1 |
numpy | 1.21.5 |
numpydoc | 1.2 |
olefile | 0.46 |
openpyxl | 3.0.9 |
packaging | 21.3 |
pandas | 1.4.2 |
pandocfilters | 1.5.0 |
panel | 0.13.0 |
param | 1.12.0 |
parsel | 1.6.0 |
parso | 0.8.3 |
partd | 1.2.0 |
pathspec | 0.7.0 |
patsy | 0.5.2 |
pep8 | 1.7.1 |
pexpect | 4.8.0 |
pickleshare | 0.7.5 |
Pillow | 9.0.1 |
pip | 21.2.4 |
pkginfo | 1.8.2 |
plotly | 5.6.0 |
pluggy | 1.0.0 |
poyo | 0.5.0 |
prometheus-client | 0.13.1 |
prompt-toolkit | 3.0.20 |
Protego | 0.1.16 |
protobuf | 3.19.1 |
psutil | 5.8.0 |
ptyprocess | 0.7.0 |
pure-eval | 0.2.2 |
py | 1.11.0 |
pyasn1 | 0.4.8 |
pyasn1-modules | 0.2.8 |
pycodestyle | 2.7.0 |
pycosat | 0.6.3 |
pycparser | 2.21 |
pyct | 0.4.6 |
pycurl | 7.44.1 |
PyDispatcher | 2.0.5 |
pydocstyle | 6.1.1 |
pyerfa | 2.0.0 |
pyflakes | 2.3.1 |
Pygments | 2.11.2 |
PyHamcrest | 2.0.2 |
PyJWT | 2.1.0 |
pylint | 2.9.6 |
pyls-spyder | 0.4.0 |
pyodbc | 4.0.32 |
pyOpenSSL | 21.0.0 |
pyparsing | 3.0.4 |
pyrsistent | 0.18.0 |
PySocks | 1.7.1 |
pytest | 7.1.1 |
python-dateutil | 2.8.2 |
python-lsp-black | 1.0.0 |
python-lsp-jsonrpc | 1.0.0 |
python-lsp-server | 1.2.4 |
python-slugify | 5.0.2 |
python-snappy | 0.6.0 |
pytz | 2021.3 |
pyviz-comms | 2.0.2 |
PyWavelets | 1.3.0 |
pyxdg | 0.27 |
PyYAML | 6 |
pyzmq | 22.3.0 |
QDarkStyle | 3.0.2 |
qstylizer | 0.1.10 |
QtAwesome | 1.0.3 |
qtconsole | 5.3.0 |
QtPy | 2.0.1 |
queuelib | 1.5.0 |
regex | 2022.3.15 |
requests | 2.27.1 |
requests-file | 1.5.1 |
rope | 0.22.0 |
rsa | 4.7.2 |
Rtree | 0.9.7 |
ruamel-yaml-conda | 0.15.100 |
s3transfer | 0.5.0 |
scikit-image | 0.19.2 |
scikit-learn | 1.0.2 |
scikit-learn-intelex | 2021.20220215.212715 |
scipy | 1.7.3 |
Scrapy | 2.6.1 |
seaborn | 0.11.2 |
SecretStorage | 3.3.1 |
Send2Trash | 1.8.0 |
service-identity | 18.1.0 |
setuptools | 61.2.0 |
sip | 4.19.13 |
six | 1.16.0 |
smart-open | 5.1.0 |
sniffio | 1.2.0 |
snowballstemmer | 2.2.0 |
sortedcollections | 2.1.0 |
sortedcontainers | 2.4.0 |
soupsieve | 2.3.1 |
Sphinx | 4.4.0 |
sphinxcontrib-applehelp | 1.0.2 |
sphinxcontrib-devhelp | 1.0.2 |
sphinxcontrib-htmlhelp | 2.0.0 |
sphinxcontrib-jsmath | 1.0.1 |
sphinxcontrib-qthelp | 1.0.3 |
sphinxcontrib-serializinghtml | 1.1.5 |
spyder | 5.1.5 |
spyder-kernels | 2.1.3 |
SQLAlchemy | 1.4.32 |
stack-data | 0.2.0 |
statsmodels | 0.13.2 |
sympy | 1.10.1 |
tables | 3.6.1 |
tabulate | 0.8.9 |
TBB | 0.2 |
tblib | 1.7.0 |
tenacity | 8.0.1 |
terminado | 0.13.1 |
testpath | 0.5.0 |
text-unidecode | 1.3 |
textdistance | 4.2.1 |
threadpoolctl | 2.2.0 |
three-merge | 0.1.1 |
tifffile | 2021.7.2 |
tinycss | 0.4 |
tldextract | 3.2.0 |
toml | 0.10.2 |
tomli | 1.2.2 |
toolz | 0.11.2 |
tornado | 6.1 |
tqdm | 4.64.0 |
traitlets | 5.1.1 |
Twisted | 22.2.0 |
typed-ast | 1.4.3 |
typing_extensions | 4.1.1 |
ujson | 5.1.0 |
Unidecode | 1.2.0 |
urllib3 | 1.26.9 |
w3lib | 1.21.0 |
watchdog | 2.1.6 |
wcwidth | 0.2.5 |
webencodings | 0.5.1 |
websocket-client | 0.58.0 |
Werkzeug | 2.0.3 |
wheel | 0.37.1 |
widgetsnbextension | 3.5.2 |
wrapt | 1.12.1 |
wurlitzer | 3.0.2 |
xarray | 0.20.1 |
xlrd | 2.0.1 |
XlsxWriter | 3.0.3 |
yapf | 0.31.0 |
yarl | 1.6.3 |
zict | 2.0.0 |
zipp | 3.7.0 |
zope.interface | 5.4.0 |
R Packages
Here is the list of installed R Packages:
Package | Version |
---|---|
abc | 2.2.1 |
abc.data | 1.0 |
abe | 3.0.1 |
abind | 1.4-5 |
acepack | 1.4.1 |
adabag | 4.2 |
ade4 | 1.7-19 |
ADGofTest | 0.3 |
admisc | 0.29 |
aggregation | 1.0.1 |
AICcmodavg | 2.3-1 |
akima | 0.6-3.4 |
alabama | 2022.4-1 |
AlgDesign | 1.2.1 |
alluvial | 0.1-2 |
animation | 2.7 |
aod | 1.3.2 |
apcluster | 1.4.10 |
ape | 5.6-2 |
argparse | 2.1.5 |
arm | 1.12-2 |
askpass | 1.1 |
asnipe | 1.1.16 |
assertive | 0.3-6 |
assertive.base | 0.0-9 |
assertive.code | 0.0-3 |
assertive.data | 0.0-3 |
assertive.data.uk | 0.0-2 |
assertive.data.us | 0.0-2 |
assertive.datetimes | 0.0-3 |
assertive.files | 0.0-2 |
assertive.matrices | 0.0-2 |
assertive.models | 0.0-2 |
assertive.numbers | 0.0-2 |
assertive.properties | 0.0-5 |
assertive.reflection | 0.0-5 |
assertive.sets | 0.0-3 |
assertive.strings | 0.0-3 |
assertive.types | 0.0-3 |
assertthat | 0.2.1 |
AUC | 0.3.2 |
audio | 0.1-10 |
aws | 2.5-1 |
awsMethods | 1.1-1 |
backports | 1.4.1 |
bacr | 1.0.1 |
bartMachine | 1.2.6 |
bartMachineJARs | 1.1 |
base64 | 2.0 |
base64enc | 0.1-3 |
BatchJobs | 1.9 |
batchmeans | 1.0-4 |
BayesianTools | 0.1.7 |
BayesLogit | 2.1 |
bayesm | 3.1-4 |
BayesPen | 1.0 |
bayesplot | 1.9.0 |
BB | 2019.10-1 |
BBmisc | 1.12 |
bbmle | 1.0.25 |
BCEE | 1.3.0 |
BDgraph | 2.67 |
bdsmatrix | 1.3-6 |
beanplot | 1.3.1 |
beeswarm | 0.4.0 |
betareg | 3.1-4 |
BH | 1.78.0-0 |
BiasedUrn | 1.07 |
bibtex | 0.4.2.3 |
BIGL | 1.6.6 |
bigmemory | 4.6.1 |
bigmemory.sri | 0.1.3 |
bindr | 0.1.1 |
bindrcpp | 0.2.2 |
bio3d | 2.4-3 |
biom | 0.3.12 |
biomod2 | 3.5.1 |
bit | 4.0.4 |
bit64 | 4.0.5 |
bitops | 1.0-7 |
blavaan | 0.4-3 |
blob | 1.2.3 |
BMA | 3.18.17 |
bmp | 0.3 |
bnlearn | 4.7.1 |
bold | 1.2.0 |
bootstrap | 2019.6 |
Boruta | 7.0.0 |
brew | 1.0-7 |
brglm | 0.7.2 |
bridgedist | 0.1.1 |
bridgesampling | 1.1-2 |
brio | 1.1.3 |
brms | 2.17.0 |
Brobdingnag | 1.2-7 |
broom | 0.8.0 |
broom.helpers | 1.7.0 |
broom.mixed | 0.2.9.4 |
bslib | 0.3.1 |
bst | 0.3-23 |
cachem | 1.0.6 |
Cairo | 1.5-15 |
calibrate | 1.7.7 |
callr | 3.7.0 |
car | 3.1-0 |
carData | 3.0-5 |
caret | 6.0-92 |
catlearn | 0.9.1 |
caTools | 1.18.2 |
CBPS | 0.23 |
celestial | 1.4.6 |
cellranger | 1.1.0 |
cgdsr | 1.3.0 |
cghFLasso | 0.2-1 |
checkmate | 2.1.0 |
chemometrics | 1.4.2 |
chkptstanr | 0.1.1 |
chron | 2.3-57 |
circlize | 0.4.15 |
circular | 0.4-95 |
classInt | 0.4-7 |
cli | 3.3.0 |
clipr | 0.8.0 |
clisymbols | 1.2.0 |
clue | 0.3-61 |
clusterGeneration | 1.3.7 |
clusterRepro | 0.9 |
clustree | 0.4.4 |
clValid | 0.7 |
cmprsk | 2.2-11 |
cNORM | 3.0.2 |
cobalt | 4.3.2 |
cobs | 1.3-5 |
coda | 0.19-4 |
coin | 1.4-2 |
collapse | 1.8.6 |
colorspace | 2.0-3 |
colourpicker | 1.1.1 |
combinat | 0.0-8 |
ComICS | 1.0.4 |
commonmark | 1.8.0 |
compositions | 2.0-4 |
CompQuadForm | 1.4.3 |
conditionz | 0.1.0 |
conquer | 1.3.0 |
contfrac | 1.1-12 |
copCAR | 2.0-4 |
copula | 1.1-0 |
corpcor | 1.6.10 |
corrplot | 0.92 |
covr | 3.5.1 |
CovSel | 1.2.1 |
covsim | 1.0.0 |
cowplot | 1.1.1 |
coxed | 0.3.3 |
cpp11 | 0.4.2 |
crayon | 1.5.1 |
credentials | 1.3.2 |
crosstalk | 1.2.0 |
crul | 1.2.0 |
cSEM | 0.4.0 |
csSAM | 1.2.4 |
ctmle | 0.1.2 |
cubature | 2.0.4.4 |
cubelyr | 1.0.1 |
curl | 4.3.2 |
cvAUC | 1.1.4 |
CVST | 0.2-3 |
d3Network | 0.5.2.1 |
dagitty | 0.3-1 |
data.table | 1.14.2 |
data.tree | 1.0.0 |
DataCombine | 0.2.21 |
date | 1.2-39 |
dbarts | 0.9-22 |
DBI | 1.1.3 |
dbplyr | 2.2.0 |
dcurver | 0.9.2 |
ddalpha | 1.3.13 |
deal | 1.2-39 |
debugme | 1.1.0 |
deldir | 1.0-6 |
dendextend | 1.15.2 |
DEoptim | 2.2-6 |
DEoptimR | 1.0-11 |
Deriv | 4.1.3 |
desc | 1.4.1 |
DescTools | 0.99.45 |
deSolve | 1.32 |
devtools | 2.4.3 |
dfidx | 0.0-4 |
DHARMa | 0.4.5 |
dHSIC | 2.1 |
diagram | 1.6.5 |
DiagrammeR | 1.0.9 |
DiceKriging | 1.6.0 |
dichromat | 2.0-0.1 |
diffobj | 0.3.5 |
digest | 0.6.29 |
dimRed | 0.2.5 |
diptest | 0.76-0 |
DiscriMiner | 0.1-29 |
dismo | 1.3-5 |
distillery | 1.2-1 |
distr | 2.8.0 |
distrEx | 2.8.0 |
distributional | 0.3.0 |
DistributionUtils | 0.6-0 |
diveRsity | 1.9.90 |
DMCfun | 2.0.2 |
docstring | 1.0.0 |
doMC | 1.3.8 |
doParallel | 1.0.17 |
doRNG | 1.8.2 |
doSNOW | 1.0.20 |
dotCall64 | 1.0-1 |
downloader | 0.4 |
dplyr | 1.0.9 |
dr | 3.0.10 |
drgee | 1.1.10 |
DRR | 0.0.4 |
drugCombo | 1.2.1 |
DT | 0.23 |
dtangle | 2.0.9 |
dtplyr | 1.2.1 |
DTRreg | 1.7 |
dtw | 1.22-3 |
dummies | 1.5.6 |
dygraphs | 1.1.1.6 |
dynamicTreeCut | 1.63-1 |
e1071 | 1.7-11 |
earth | 5.3.1 |
EasyABC | 1.5 |
elementR | 1.3.7 |
ellipse | 0.4.3 |
ellipsis | 0.3.2 |
elliptic | 1.4-0 |
emdbook | 1.3.12 |
emulator | 1.2-21 |
energy | 1.7-10 |
ENMeval | 2.0.3 |
entropy | 1.3.1 |
EnvStats | 2.7.0 |
ergm | 4.2.2 |
ergm.count | 4.1.1 |
evaluate | 0.15 |
EValue | 4.1.3 |
evd | 2.3-6 |
Exact | 3.1 |
expm | 0.999-6 |
ExPosition | 2.8.23 |
expsmooth | 2.3 |
extrafont | 0.18 |
extrafontdb | 1.0 |
extRemes | 2.1-2 |
FactoMineR | 2.4 |
FactorCopula | 0.8 |
fail | 1.3 |
fansi | 1.0.3 |
farver | 2.1.0 |
fastcluster | 1.2.3 |
fasterize | 1.0.3 |
fastICA | 1.2-3 |
fastmap | 1.1.0 |
fastmatch | 1.1-3 |
fdrtool | 1.2.17 |
feather | 0.3.5 |
ff | 4.0.7 |
ffbase | 0.13.3 |
fftw | 1.0-7 |
fftwtools | 0.9-11 |
fields | 13.3 |
filehash | 2.4-3 |
finalfit | 1.0.4 |
findpython | 1.0.7 |
fishMod | 0.29 |
fitdistrplus | 1.1-8 |
flashClust | 1.01-2 |
flexclust | 1.4-1 |
flexmix | 2.3-18 |
fma | 2.4 |
FME | 1.3.6.2 |
fmri | 1.9.6 |
FNN | 1.1.3.1 |
fontawesome | 0.2.2 |
forcats | 0.5.1 |
foreach | 1.5.2 |
forecast | 8.16 |
formatR | 1.12 |
Formula | 1.2-4 |
formula.tools | 1.7.1 |
fossil | 0.4.0 |
fpc | 2.2-9 |
fpp | 0.5 |
fracdiff | 1.5-1 |
fs | 1.5.2 |
furrr | 0.3.0 |
futile.logger | 1.4.3 |
futile.options | 1.0.1 |
future | 1.26.1 |
future.apply | 1.9.0 |
gam | 1.20.1 |
gamlss | 5.4-3 |
gamlss.data | 6.0-2 |
gamlss.dist | 6.0-3 |
gamlss.tr | 5.1-7 |
gamm4 | 0.2-6 |
gap | 1.2.3-6 |
gap.datasets | 0.0.5 |
gapfill | 0.9.6-1 |
gargle | 1.2.0 |
gaussquad | 1.0-3 |
gbm | 2.1.8 |
gbRd | 0.4-11 |
gclus | 1.3.2 |
gdalUtils | 2.0.3.2 |
gdata | 2.18.0.1 |
gdistance | 1.3-6 |
gee | 4.13-23 |
geepack | 1.3.4 |
geex | 1.0.12 |
geiger | 2.0.10 |
GeneNet | 1.2.16 |
generics | 0.1.2 |
genoPlotR | 0.8.11 |
GenSA | 1.1.7 |
geojsonsf | 2.0.3 |
geometries | 0.2.0 |
geometry | 0.4.6 |
gert | 1.6.0 |
getopt | 1.20.3 |
GetoptLong | 1.0.5 |
GGally | 2.1.2 |
ggbeeswarm | 0.6.0 |
ggdag | 0.2.4 |
ggExtra | 0.10.0 |
ggfan | 0.1.3 |
ggforce | 0.3.3 |
ggnetwork | 0.5.10 |
ggplot2 | 3.3.6 |
ggpubr | 0.4.0 |
ggraph | 2.0.5 |
ggrepel | 0.9.1 |
ggridges | 0.5.3 |
ggsci | 2.9 |
ggsignif | 0.6.3 |
ggvis | 0.4.7 |
gh | 1.3.0 |
GillespieSSA | 0.6.2 |
git2r | 0.30.1 |
gitcreds | 0.1.1 |
GJRM | 0.2-6 |
glasso | 1.11 |
gld | 2.6.4 |
gllvm | 1.3.1 |
glmmML | 1.1.3 |
glmmTMB | 1.1.3 |
glmnet | 4.1-4 |
GlobalOptions | 0.1.2 |
globals | 0.15.0 |
glue | 1.6.2 |
gmm | 1.6-6 |
gmodels | 2.18.1.1 |
gmp | 0.6-5 |
gnumeric | 0.7-8 |
goftest | 1.2-3 |
gomms | 1.0 |
googledrive | 2.0.0 |
googlesheets4 | 1.0.0 |
gower | 1.0.0 |
GPArotation | 2022.4-1 |
gplots | 3.1.3 |
graphlayouts | 0.8.0 |
grf | 2.1.0 |
gridBase | 0.4-7 |
gridExtra | 2.3 |
grImport2 | 0.2-0 |
grpreg | 3.4.0 |
GSA | 1.03.2 |
gsalib | 2.1 |
gsl | 2.1-7.1 |
gsw | 1.0-6 |
gt | 0.6.0 |
gtable | 0.3.0 |
gtools | 3.9.2.2 |
gtsummary | 1.6.1 |
GUTS | 1.2.3 |
gWidgets2 | 1.0-9 |
gWidgets2tcltk | 1.0-8 |
GxEScanR | 2.0.2 |
h2o | 3.36.1.2 |
hal9001 | 0.4.3 |
hardhat | 1.1.0 |
harmony | 0.1.0 |
hash | 2.2.6.2 |
haven | 2.5.0 |
hdf5r | 1.3.5 |
hdm | 0.3.1 |
heatmap3 | 1.1.9 |
here | 1.0.1 |
hexbin | 1.28.2 |
HiddenMarkov | 1.8-13 |
highr | 0.9 |
Hmisc | 4.7-0 |
hms | 1.1.1 |
Hmsc | 3.0-11 |
htmlTable | 2.4.0 |
htmltools | 0.5.2 |
htmlwidgets | 1.5.4 |
httpcode | 0.3.0 |
httpuv | 1.6.5 |
httr | 1.4.3 |
huge | 1.3.5 |
hunspell | 3.0.1 |
hwriter | 1.3.2.1 |
HWxtest | 1.1.9 |
hypergeo | 1.2-13 |
ica | 1.0-2 |
IDPmisc | 1.1.20 |
idr | 1.3 |
ids | 1.0.1 |
ie2misc | 0.8.8 |
igraph | 1.3.2 |
image.binarization | 0.1.2 |
imager | 0.42.13 |
imagerExtra | 1.3.2 |
ineq | 0.2-13 |
influenceR | 0.1.0.1 |
infotheo | 1.2.0.1 |
ini | 0.3.1 |
inline | 0.3.19 |
intergraph | 2.0-2 |
interpretR | 0.2.4 |
intrinsicDimension | 1.2.0 |
inum | 1.0-4 |
ipred | 0.9-13 |
irace | 3.4.1 |
irlba | 2.3.5 |
ismev | 1.42 |
Iso | 0.0-18.1 |
isoband | 0.2.5 |
ISOcodes | 2022.01.10 |
iterators | 1.0.14 |
itertools | 0.1-3 |
JADE | 2.0-3 |
janeaustenr | 0.1.5 |
JBTools | 0.7.2.9 |
jiebaR | 0.11 |
jiebaRD | 0.1 |
jomo | 2.7-3 |
jpeg | 0.1-9 |
jquerylib | 0.1.4 |
jsonify | 1.2.1 |
jsonlite | 1.8.0 |
jstable | 1.0.7 |
kde1d | 1.0.4 |
kedd | 1.0.3 |
kernlab | 0.9-31 |
klaR | 1.7-0 |
knitr | 1.39 |
KODAMA | 1.9 |
kohonen | 3.0.11 |
ks | 1.13.5 |
labdsv | 2.0-1 |
labeling | 0.4.2 |
labelled | 2.9.1 |
laeken | 0.5.2 |
lambda.r | 1.2.4 |
LaplacesDemon | 16.1.6 |
lars | 1.3 |
lassosum | 0.4.5 |
later | 1.3.0 |
latticeExtra | 0.6-29 |
lava | 1.6.10 |
lavaan | 0.6-11 |
lazy | 1.2-17 |
lazyeval | 0.2.2 |
lda | 1.4.2 |
ldbounds | 2.0.0 |
leafem | 0.2.0 |
leaflet | 2.1.1 |
leaflet.providers | 1.9.0 |
leafsync | 0.1.0 |
leaps | 3.1 |
LearnBayes | 2.15.1 |
leiden | 0.4.2 |
lhs | 1.1.5 |
libcoin | 1.0-9 |
lifecycle | 1.0.1 |
limSolve | 1.5.6 |
linkcomm | 1.0-14 |
linprog | 0.9-4 |
liquidSVM | 1.2.4 |
listenv | 0.8.0 |
lme4 | 1.1-29 |
lmerTest | 3.1-3 |
lmom | 2.9 |
Lmoments | 1.3-1 |
lmtest | 0.9-40 |
lobstr | 1.1.2 |
locfdr | 1.1-8 |
locfit | 1.5-9.5 |
logcondens | 2.1.6 |
logistf | 1.24.1 |
logspline | 2.1.17 |
longitudinal | 1.1.13 |
longmemo | 1.1-2 |
loo | 2.5.1 |
lpSolve | 5.6.15 |
lpSolveAPI | 5.5.2.0-17.7 |
lqa | 1.0-3 |
lsei | 1.3-0 |
lslx | 0.6.10 |
lubridate | 1.8.0 |
lwgeom | 0.2-8 |
magic | 1.6-0 |
magick | 2.7.3 |
magrittr | 2.0.3 |
MALDIquant | 1.21 |
manipulateWidget | 0.11.1 |
mapproj | 1.2.8 |
maps | 3.4.0 |
maptools | 1.1-4 |
markdown | 1.1 |
Matching | 4.10-2 |
MatchIt | 4.4.0 |
mathjaxr | 1.6-0 |
matlab | 1.0.4 |
matrixcalc | 1.0-5 |
MatrixModels | 0.5-0 |
matrixStats | 0.62.0 |
maxLik | 1.5-2 |
maxlike | 0.1-8 |
maxnet | 0.1.4 |
mboost | 2.9-7 |
mclust | 5.4.10 |
mcmc | 0.9-7 |
MCMCpack | 1.6-3 |
mcmcse | 1.5-0 |
mda | 0.5-3 |
medflex | 0.6-7 |
mediation | 4.5.0 |
memoise | 2.0.1 |
memuse | 4.2-1 |
metadat | 1.2-0 |
metafor | 3.4-0 |
MetaUtility | 2.1.2 |
mets | 1.2.9 |
mgsub | 1.7.3 |
mhsmm | 0.4.16 |
mi | 1.1 |
mice | 3.14.0 |
miceadds | 3.13-12 |
microbenchmark | 1.4.9 |
MIIVsem | 0.5.8 |
mime | 0.12 |
minerva | 1.5.10 |
miniUI | 0.1.1.1 |
minpack.lm | 1.2-2 |
minqa | 1.2.4 |
mirt | 1.36.1 |
misc3d | 0.9-1 |
miscTools | 0.6-26 |
missForest | 1.5 |
mitml | 0.4-3 |
mitools | 2.4 |
mixtools | 1.2.0 |
mlbench | 2.1-3 |
mlegp | 3.1.9 |
MLmetrics | 1.1.1 |
mlogit | 1.1-1 |
mlr | 2.19.0 |
mltools | 0.3.5 |
mnormt | 2.1.0 |
ModelMetrics | 1.2.2.2 |
modelr | 0.1.8 |
modeltools | 0.2-23 |
momentfit | 0.2 |
moments | 0.14.1 |
MonteCarlo | 1.0.6 |
mpath | 0.4-2.22 |
mRMRe | 2.1.2 |
msm | 1.6.9 |
mstate | 0.3.2 |
multcomp | 1.4-19 |
multicool | 0.1-12 |
multipol | 1.0-7 |
munsell | 0.5.0 |
mvabund | 4.2.1 |
mvnfast | 0.2.7 |
mvtnorm | 1.1-3 |
nabor | 0.5.0 |
naniar | 0.6.1 |
natserv | 1.0.0 |
naturalsort | 0.1.3 |
ncbit | 2013.03.29 |
ncdf4 | 1.19 |
NCmisc | 1.1.6 |
network | 1.17.2 |
networkDynamic | 0.11.2 |
neuralnet | 1.44.2 |
neuRosim | 0.2-12 |
ngspatial | 1.2-2 |
NISTunits | 1.0.1 |
nleqslv | 3.3.2 |
nloptr | 2.0.3 |
NLP | 0.2-1 |
nlsem | 0.8 |
nnls | 1.4 |
nonnest2 | 0.5-5 |
nor1mix | 1.3-0 |
norm | 1.0-10.0 |
nortest | 1.0-4 |
np | 0.60-11 |
npsurv | 0.5-0 |
numDeriv | 2016.8-1.1 |
oai | 0.3.2 |
oce | 1.7-6 |
OceanView | 1.0.6 |
oddsratio | 2.0.1 |
openair | 2.10-0 |
OpenMx | 2.20.6 |
openssl | 2.0.2 |
openxlsx | 4.2.5 |
operator.tools | 1.6.3 |
optextras | 2019-12.4 |
optimr | 2019-12.16 |
optimx | 2022-4.30 |
optmatch | 0.10.3 |
optparse | 1.7.1 |
ordinal | 2019.12-10 |
origami | 1.0.5 |
orthopolynom | 1.0-6 |
outliers | 0.15 |
packrat | 0.8.0 |
pacman | 0.5.1 |
pammtools | 0.5.8 |
pamr | 1.56.1 |
pan | 1.6 |
parallelly | 1.32.0 |
parallelMap | 1.5.1 |
ParamHelpers | 1.14 |
parsedate | 1.3.0 |
party | 1.3-10 |
partykit | 1.2-16 |
pastecs | 1.3.21 |
patchwork | 1.1.1 |
pbapply | 1.5-0 |
pbivnorm | 0.6.0 |
pbkrtest | 0.5.1 |
PCAmatchR | 0.3.2 |
pcaPP | 2.0-1 |
pdp | 0.8.1 |
PearsonDS | 1.2.2 |
pec | 2022.05.04 |
penalized | 0.9-52 |
penfa | 0.1.1 |
peperr | 1.4 |
PermAlgo | 1.2 |
permute | 0.9-7 |
phangorn | 2.9.0 |
pheatmap | 1.0.12 |
phylobase | 0.8.10 |
phytools | 1.0-3 |
pillar | 1.7.0 |
pim | 2.0.2 |
pinfsc50 | 1.2.0 |
pixmap | 0.4-12 |
pkgbuild | 1.3.1 |
pkgconfig | 2.0.3 |
pkgload | 1.2.4 |
pkgmaker | 0.32.2 |
plogr | 0.2.0 |
plot3D | 1.4 |
plot3Drgl | 1.0.3 |
plotly | 4.10.0 |
plotmo | 3.6.2 |
plotrix | 3.8-2 |
pls | 2.8-0 |
plyr | 1.8.7 |
png | 0.1-7 |
PoissonSeq | 1.1.2 |
poLCA | 1.6.0.1 |
polspline | 1.1.20 |
polyclip | 1.10-0 |
polycor | 0.8-1 |
polynom | 1.4-1 |
posterior | 1.2.2 |
prabclus | 2.3-2 |
pracma | 2.3.8 |
praise | 1.0.0 |
PresenceAbsence | 1.1.10 |
preseqR | 4.0.0 |
prettyGraphs | 2.1.6 |
prettyunits | 1.1.1 |
pROC | 1.18.0 |
processx | 3.6.1 |
prodlim | 2019.11.13 |
profileModel | 0.6.1 |
proftools | 0.99-3 |
progress | 1.2.2 |
progressr | 0.10.1 |
projpred | 2.1.2 |
promises | 1.2.0.1 |
proto | 1.0.0 |
proxy | 0.4-27 |
pryr | 0.1.5 |
ps | 1.7.1 |
pscl | 1.5.5 |
pspline | 1.0-19 |
psych | 2.2.5 |
Publish | 2020.12.23 |
pulsar | 0.3.7 |
purrr | 0.3.4 |
pvclust | 2.2-0 |
qgam | 1.3.4 |
qgraph | 1.9.2 |
qqman | 0.1.8 |
qrnn | 2.0.5 |
quadprog | 1.5-8 |
quantmod | 0.4.20 |
quantreg | 5.93 |
questionr | 0.7.7 |
R.cache | 0.15.0 |
R.matlab | 3.6.2 |
R.methodsS3 | 1.8.2 |
R.oo | 1.25.0 |
R.rsp | 0.44.0 |
R.utils | 2.11.0 |
R6 | 2.5.1 |
randomForest | 4.7-1.1 |
randomForestSRC | 3.1.0 |
randtoolbox | 2.0.1 |
rangeModelMetadata | 0.1.4 |
ranger | 0.14.1 |
RANN | 2.6.1 |
rapidjsonr | 1.2.0 |
rappdirs | 0.3.3 |
raster | 3.5-15 |
rasterVis | 0.51.2 |
ratelimitr | 0.4.1 |
rbibutils | 2.2.8 |
rbison | 1.0.0 |
Rborist | 0.2-3 |
RCAL | 2.0 |
Rcgmin | 2022-4.30 |
RCircos | 1.2.2 |
rcmdcheck | 1.4.0 |
RColorBrewer | 1.1-3 |
Rcpp | 1.0.8.3 |
RcppArmadillo | 0.11.2.0.0 |
RcppEigen | 0.3.3.9.2 |
RcppGSL | 0.3.11 |
RcppParallel | 5.1.5 |
RcppProgress | 0.4.2 |
RcppRoll | 0.3.0 |
RcppThread | 2.1.3 |
RcppTOML | 0.1.7 |
RCurl | 1.98-1.7 |
rda | 1.0.2-2.1 |
Rdpack | 2.3.1 |
rdrop2 | 0.8.2.1 |
readbitmap | 0.1.5 |
reader | 1.0.6 |
readODS | 1.7.0 |
readr | 2.1.2 |
readxl | 1.4.0 |
rebird | 1.3.0 |
recipes | 0.2.0 |
RefFreeEWAS | 2.2 |
registry | 0.5-1 |
regsem | 1.8.0 |
relsurv | 2.2-7 |
rematch | 1.0.1 |
rematch2 | 2.1.2 |
remotes | 2.4.2 |
rentrez | 1.2.3 |
renv | 0.15.5 |
reprex | 2.0.1 |
resample | 0.6 |
reshape | 0.8.9 |
reshape2 | 1.4.4 |
reticulate | 1.25 |
rex | 1.2.1 |
rgbif | 3.7.2 |
RGCCA | 2.1.2 |
rgdal | 1.5-32 |
rgeos | 0.5-9 |
rgexf | 0.16.2 |
rgl | 0.109.2 |
Rglpk | 0.6-4 |
RhpcBLASctl | 0.21-247.1 |
ridigbio | 0.3.5 |
RInside | 0.2.17 |
rio | 0.5.29 |
riskRegression | 2022.03.22 |
ritis | 1.0.0 |
RItools | 0.1-18 |
rJava | 1.0-6 |
rjson | 0.2.21 |
RJSONIO | 1.3-1.6 |
rlang | 1.0.2 |
rle | 0.9.2 |
rlecuyer | 0.3-5 |
rlemon | 0.2.0 |
rmarkdown | 2.14 |
rmeta | 3.0 |
Rmpfr | 0.8-9 |
Rmpi | 0.6-9.2 |
rms | 6.3-0 |
RMTstat | 0.3.1 |
rncl | 0.8.6 |
rnetcarto | 0.2.5 |
RNeXML | 2.4.7 |
rngtools | 1.5.2 |
rngWELL | 0.10-7 |
robustbase | 0.95-0 |
ROCR | 1.0-11 |
ROI | 1.0-0 |
ROI.plugin.glpk | 1.0-0 |
Rook | 1.1-1 |
rootSolve | 1.8.2.3 |
rotl | 3.0.12 |
roxygen2 | 7.2.0 |
rpact | 3.3.0 |
rpf | 1.0.11 |
RPMM | 1.25 |
rprojroot | 2.0.3 |
rrcov | 1.7-0 |
rredlist | 0.7.0 |
rsconnect | 0.8.26 |
Rserve | 1.8-10 |
RSNNS | 0.4-14 |
Rsolnp | 1.16 |
RSpectra | 0.16-1 |
RSQLite | 2.2.14 |
Rssa | 1.0.4 |
rstan | 2.21.5 |
rstantools | 2.2.0 |
rstatix | 0.7.0 |
rstudioapi | 0.13 |
rtdists | 0.11-5 |
Rtsne | 0.16 |
Rttf2pt1 | 1.3.10 |
RUnit | 0.4.32 |
ruv | 0.9.7.1 |
rversions | 2.1.1 |
rvertnet | 0.8.2 |
rvest | 1.0.2 |
rvinecopulib | 0.6.1.1.3 |
Rvmmin | 2018-4.17.1 |
RWeka | 0.4-44 |
RWekajars | 3.9.3-2 |
s2 | 1.0.7 |
sampling | 2.9 |
sandwich | 3.0-2 |
sass | 0.4.1 |
SBdecomp | 1.2 |
scales | 1.2.0 |
scam | 1.2-12 |
scatterplot3d | 0.3-41 |
sctransform | 0.3.3 |
SDMTools | 1.1-221.2 |
seewave | 2.2.0 |
segmented | 1.6-0 |
selectr | 0.4-2 |
sem | 3.1-15 |
semPLS | 1.0-10 |
semTools | 0.5-6 |
sendmailR | 1.2-1.1 |
sensemakr | 0.1.4 |
seqinr | 4.2-16 |
servr | 0.24 |
sessioninfo | 1.2.2 |
setRNG | 2022.4-1 |
sf | 1.0-7 |
sfheaders | 0.4.0 |
sfsmisc | 1.1-13 |
shape | 1.4.6 |
shapefiles | 0.7 |
shiny | 1.7.1 |
shinydashboard | 0.7.2 |
shinyjs | 2.1.0 |
shinystan | 2.6.0 |
shinythemes | 1.2.0 |
signal | 0.7-7 |
SignifReg | 4.3 |
simex | 1.8 |
SimSeq | 1.4.0 |
SKAT | 2.2.4 |
slam | 0.1-50 |
sm | 2.2-5.7 |
smoother | 1.1 |
sn | 2.0.2 |
sna | 2.7 |
SNFtool | 2.3.1 |
snow | 0.4-4 |
SnowballC | 0.7.0 |
snowfall | 1.84-6.1 |
SOAR | 0.99-11 |
solrium | 1.2.0 |
som | 0.3-5.1 |
soundecology | 1.3.3 |
sourcetools | 0.1.7 |
sp | 1.5-0 |
spaa | 0.2.2 |
spam | 2.8-0 |
spaMM | 3.12.0 |
SparseM | 1.81 |
SPAtest | 3.1.2 |
spatstat | 2.3-4 |
spatstat.core | 2.4-4 |
spatstat.data | 2.2-0 |
spatstat.geom | 2.4-0 |
spatstat.linnet | 2.3-2 |
spatstat.random | 2.2-0 |
spatstat.sparse | 2.1-1 |
spatstat.utils | 2.3-1 |
spData | 2.0.1 |
splitstackshape | 1.4.8 |
spls | 2.2-3 |
spocc | 1.2.0 |
spThin | 0.2.0 |
SQUAREM | 2021.1 |
stabledist | 0.7-1 |
stabs | 0.6-4 |
StanHeaders | 2.21.0-7 |
stargazer | 5.2.3 |
stars | 0.5-5 |
startupmsg | 0.9.6 |
StatMatch | 1.4.1 |
statmod | 1.4.36 |
statnet | 2019.6 |
statnet.common | 4.6.0 |
stdReg | 3.4.1 |
stopwords | 2.3 |
stringdist | 0.9.8 |
stringi | 1.7.6 |
stringr | 1.4.0 |
strucchange | 1.5-3 |
styler | 1.7.0 |
subplex | 1.8 |
SuperLearner | 2.0-28 |
SuppDists | 1.1-9.7 |
survey | 4.1-1 |
survivalROC | 1.0.3 |
svd | 0.5.1 |
symmoments | 1.2.1 |
sys | 3.4 |
tableone | 0.13.2 |
taxize | 0.9.100 |
tcltk2 | 1.2-11 |
tclust | 1.5-1 |
TeachingDemos | 2.12 |
tensor | 1.5 |
tensorA | 0.36.2 |
tergm | 4.1.0 |
terra | 1.5-34 |
testit | 0.13 |
testthat | 3.1.4 |
TFisher | 0.2.0 |
TH.data | 1.1-1 |
threejs | 0.3.3 |
tibble | 3.1.7 |
tictoc | 1.0.1 |
tidygraph | 1.2.1 |
tidyr | 1.2.0 |
tidyselect | 1.1.2 |
tidytext | 0.3.3 |
tidyverse | 1.3.1 |
tiff | 0.1-11 |
timeDate | 3043.102 |
timereg | 2.0.2 |
tinytex | 0.40 |
tkrplot | 0.0-26 |
tm | 0.7-8 |
tmap | 3.3-3 |
tmaptools | 3.1-1 |
TMB | 1.9.0 |
tmle | 1.5.0.2 |
tmvnsim | 1.0-2 |
tmvtnorm | 1.5 |
tokenizers | 0.2.1 |
topicmodels | 0.2-12 |
TraMineR | 2.2-4 |
tree | 1.0-42 |
triebeard | 0.3.0 |
trimcluster | 0.1-5 |
tripack | 1.3-9.1 |
truncnorm | 1.0-8 |
trust | 0.1-8 |
tseries | 0.10-51 |
tseriesChaos | 0.1-13.1 |
tsna | 0.3.5 |
tsne | 0.1-3.1 |
TTR | 0.24.3 |
tuneR | 1.4.0 |
twang | 2.5 |
tweedie | 2.3.3 |
tweenr | 1.0.2 |
tzdb | 0.3.0 |
ucminf | 1.1-4 |
unbalanced | 2.0 |
uniqueAtomMat | 0.1-3-2 |
units | 0.8-0 |
unmarked | 1.2.5 |
UpSetR | 1.4.0 |
urca | 1.3-0 |
urltools | 1.7.3 |
uroot | 2.1-2 |
usethis | 2.1.6 |
utf8 | 1.2.2 |
uuid | 1.1-0 |
V8 | 4.2.0 |
vcd | 1.4-10 |
vcfR | 1.12.0 |
vctrs | 0.4.1 |
vegan | 2.6-2 |
VennDiagram | 1.7.3 |
VGAM | 1.1-6 |
VIM | 6.1.1 |
VineCopula | 2.4.4 |
vioplot | 0.3.7 |
vipor | 0.4.5 |
viridis | 0.6.2 |
viridisLite | 0.4.0 |
visdat | 0.5.3 |
visNetwork | 2.1.0 |
vroom | 1.5.7 |
VSURF | 1.1.0 |
waldo | 0.4.0 |
waveslim | 1.8.3 |
wdm | 0.2.3 |
webshot | 0.5.3 |
weights | 1.0.4 |
WeightSVM | 1.7-9 |
wellknown | 0.7.4 |
whisker | 0.4 |
widgetframe | 0.3.1 |
WikidataQueryServiceR | 1.0.0 |
WikidataR | 2.3.3 |
WikipediR | 1.5.0 |
wikitaxa | 0.4.0 |
withr | 2.5.0 |
wk | 0.6.0 |
wordcloud | 2.6 |
worrms | 0.4.2 |
WriteXLS | 6.4.0 |
xfun | 0.31 |
xgboost | 1.6.0.1 |
xlsx | 0.6.5 |
xlsxjars | 0.6.1 |
XML | 3.99-0.10 |
xml2 | 1.3.3 |
xopen | 1.0.0 |
xtable | 1.8-4 |
xts | 0.12.1 |
yaImpute | 1.0-32 |
yaml | 2.3.5 |
zeallot | 0.1.0 |
zip | 2.2.0 |
zoo | 1.8-10 |